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Real- time PCR panel for the detection of SARS-CoV-2, Respiratory Syncytial Virus (RSV), and Influenza virus

The Real SARS-CoV-2 PLUS kit is a real-time PCR-based test for the qualitative detection and differentiation of up to three genes (E, N, and orf1ab) specific to the SARS-CoV-2 coronavirus, the cause of the COVID-19 disease.
The Real SARS-CoV-2/RSV/Flu test also allows for the detection of Influenza virus and RSV.

The Real SARS-CoV-2 and Real SARS-CoV-2 PLUS kits are three real-time PCR panels designed for reliable and efficient detection of SARS-CoV-2, with optimised protocols that do not require nucleic acid extraction, speeding up sample processing. In addition, the Real SARS-CoV-2/Flu/RSV test offers a comprehensive solution by enabling the simultaneous detection of SARS-CoV-2, Influenza and RSV, facilitating a more complete diagnostic response in hospital and laboratory settings.

COVID-19 is an infectious disease caused by SARS-CoV-2, a coronavirus of the betacoronavirus group and belonging to the subgenus sabercovirus, first identified in Wuhan (China) in December 2019. The World Health Organisation (WHO) declared a pandemic in March 2020, due to its rapid global spread. Although most patients present with mild to moderate symptoms (fever, fatigue, dry cough), some may develop severe forms of the disease, especially older people or those with comorbidities.

As COVID-19 symptoms may overlap with seasonal influenza (Influenza) and RSV, accurate differentiation is crucial to optimise treatment, hospital management and epidemiological control measures. Viral RNA detection by real-time RT-PCR is the reference method recommended by agencies such as China CDC, Charité – Germany and US CDC (1, 2), as it allows a rapid, sensitive and specific diagnosis, contributing to curb virus transmission by early isolation of positive cases.

(1) World Health Organization, https://www.who.int/docs/default-source/coronaviruse/protocol-v2-1.pdf, last accessed January 17, 2020
(2) Laboratory testing for coronavirus disease 2019 (COVID-19) in suspected human cases. Interim guidance 2 March 2020, WHO

Possibility of non-extraction of RNA

Detection of up to 3 genes

Identification of new variants

Endogenous internal control

Refrigerated transport

Our test for the qualitative detection of SARS-CoV-2 coronavirus, causative of COVID-19 infection

Product
Technique
Sample
Promocional Sheet
CE Decl.
Reference No.
Real SARS-CoV-2
PCR real time
RNA from saliva or nasopharyngeal, oropharyngeal or bucal swabs
5.233.048.88.000
5.233.096.88.000
Real SARS-CoV-2 PLUS
PCR real time
RNA/Lysed extract from saliva or nasopharyngeal, oropharyngeal or nasal swabs
5.239.048.88.000
5.239.096.88.000
Real SARS-CoV-2/Flu/RSV
PCR real time
RNA/Lysed extract from saliva or nasopharyngeal, oropharyngeal or nasal swabs
5.237.048.88.000
5.237.096.88.000

PCR can be performed without prior nucleic acid extraction. Only a short lysis process is needed, with reagents included in the kit. This shortens the analysis time and makes the process cheaper.

Detection up to 3 genes. Real SARS-CoV-2 allows the detection of an E gene region, specific to sarcovirus-like coronaviruses (SARS-CoV-1 and SARS-CoV-2), and a region of the orf1ab and N genes, specific to SARS-CoV-2; while the Real SARS-CoV-2 test allows the detection of 2 genes (E gene and orf1ab gene).

Genes detected are not affected by the mutations. This has been demonstrated in different in silico studies carried out with the tests. Therefore, the results obtained are reliable, minimizing the possibility of obtaining false negatives due to the appearance of new variants.

Several validated samples. The test has been designed and validated for use with DNA obtained from respiratory samples of different nature, allowing the professional to take the sample from one area or another to ensure that as much of the pathogen as possible is captured. Specifically, the kits have been validated with RNA extracted from nasopharyngeal swab, oropharyngeal swab, saliva or buccal/nasal swab (depending on the test).

The main advantage of using an endogenous internal control is that it allows checking that the extraction/lysis, retrotranscription, amplification and detection have been carried out correctly. In addition, by not having to add any extra reagents, the process is shortened and simplified.

Refrigerated transport avoids the use of dry ice, reducing costs and facilitating transport.

Publications

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Title
Link
Language
1
Utility of a direct sample real time PCR for the follow up of SARS-CoV-2 infection with different respiratory samples
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    Frequently Asked Questions

    According to in silico tests, the tests detect all variants of interest (alpha, beta, epsilon, delta, gamma). The main mutations affect the spike protein (S), which is not detected by this kit. For the delta variant, no in vitro assay has been performed, but the data obtained by comparing primer and probe sequences with the new variants are strong enough to guarantee detection.
    The use has not been validated but is theoretically compatible, as the fluorochromes used are those detected by the device.

    The assay time is similar in all thermal cyclers, with only small variations due to the time it takes for each device to reach the temperatures of each cycle. In the validated thermal cyclers, the differences are less than 10 minutes. Thus, Quantum Studio and CFX take about 80 min, with ramps of 1.6 ºC/s, and Tianlong’s take about 70 min, with ramps of 6 ºC/s. Lighcycler defaults to 4.4 ºC/s.

    The channels are equivalent. Only one, whichever is available, should be selected, as each thermal cycler usually contains only one of each group.

    The different genes have similar sensitivity. Differences are mainly due to the design of the assay. In most cases, all genes can be detected in positive samples. Thus, most assays targeting more than one gene require the detection of at least 2 genes to provide a clear positive result. In some cases, only 1 or 2 of them are detected, with the N gene being one of the most frequently detected alone. This may be due to a low amount of viral load (early or late in the infection), but also to false positive results, or to reagent contamination with a specific gene. In most tests, if only the N gene is detected, the result would be considered inconclusive, and further testing would be necessary.

    The internal control is endogenous, which means that it does not have to be added. This avoids possible errors in the procedure and ensures that all steps (extraction, retrotranscription, amplification) are correct.